Appendix C — Book configuration

The book was rendered on github using the following package configuration:

renv::diagnostics()
Diagnostics Report [renv 0.17.3]
================================

# Session Info =======================
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.3 LTS

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0

locale:
 [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
 [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
 [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
[10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   

time zone: UTC
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base     

loaded via a namespace (and not attached):
 [1] htmlwidgets_1.6.2 compiler_4.3.2    fastmap_1.1.1     cli_3.6.1        
 [5] htmltools_0.5.5   tools_4.3.2       rmarkdown_2.21    knitr_1.42       
 [9] jsonlite_1.8.4    xfun_0.39         digest_0.6.31     rlang_1.1.1      
[13] renv_0.17.3       evaluate_0.20    

# Project ============================
Project path: "~/work/handfull_of_pixels/handfull_of_pixels"

# Status =============================
* The project is already synchronized with the lockfile.

# Packages ===========================
                     Library Source   Lockfile Source Path Dependency
DBI                    1.1.3   RSPM      1.1.3   CRAN  [1]   indirect
DiceDesign               1.9   RSPM        1.9   CRAN  [1]   indirect
GPfit                  1.0-8   RSPM      1.0-8   CRAN  [1]   indirect
GenSA                  1.1.9   RSPM      1.1.9   CRAN  [1]     direct
KernSmooth           2.23-22   CRAN    2.23-22   CRAN  [2]   indirect
MASS                  7.3-60   CRAN     7.3-60   CRAN  [2]   indirect
MODISTools             1.1.4   RSPM      1.1.4   CRAN  [1]     direct
Matrix                 1.6-0   RSPM      1.6-0   CRAN  [1]   indirect
ModelMetrics         1.2.2.2   RSPM    1.2.2.2   CRAN  [1]   indirect
R6                     2.5.1   RSPM      2.5.1   CRAN  [1]   indirect
RColorBrewer           1.1-3   RSPM      1.1-3   CRAN  [1]   indirect
Rcpp                  1.0.10   RSPM     1.0.10   CRAN  [1]   indirect
SQUAREM               2021.1   RSPM     2021.1   CRAN  [1]   indirect
V8                     4.3.0   RSPM      4.3.0   CRAN  [1]   indirect
appeears                 1.1 GitHub        1.1 GitHub  [1]     direct
askpass                  1.1   RSPM        1.1   CRAN  [1]   indirect
assertthat             0.2.1   RSPM      0.2.1   CRAN  [1]   indirect
backports              1.4.1   RSPM      1.4.1   CRAN  [1]   indirect
base64enc              0.1-3   RSPM      0.1-3   CRAN  [1]   indirect
bit                    4.0.5   RSPM      4.0.5   CRAN  [1]   indirect
bit64                  4.0.5   RSPM      4.0.5   CRAN  [1]   indirect
blob                   1.2.4   RSPM      1.2.4   CRAN  [1]   indirect
boot                1.3-28.1   CRAN       <NA>   <NA>  [2]       <NA>
broom                  1.0.5   RSPM      1.0.5   CRAN  [1]   indirect
bslib                  0.4.2   RSPM      0.4.2   CRAN  [1]   indirect
cachem                 1.0.8   RSPM      1.0.8   CRAN  [1]   indirect
callr                  3.7.3   RSPM      3.7.3   CRAN  [1]   indirect
caret                 6.0-94   RSPM     6.0-94   CRAN  [1]     direct
cellranger             1.1.0   RSPM      1.1.0   CRAN  [1]   indirect
class                 7.3-22   CRAN     7.3-22   CRAN  [2]   indirect
classInt               0.4-9   RSPM      0.4-9   CRAN  [1]   indirect
cli                    3.6.1   RSPM      3.6.1   CRAN  [1]   indirect
clipr                  0.8.0   RSPM      0.8.0   CRAN  [1]   indirect
clock                  0.7.0   RSPM      0.7.0   CRAN  [1]   indirect
cluster                2.1.4   CRAN       <NA>   <NA>  [2]       <NA>
codetools             0.2-19   CRAN     0.2-19   CRAN  [2]   indirect
colorspace             2.1-0   RSPM      2.1-0   CRAN  [1]   indirect
compiler                <NA>   <NA>       <NA>   <NA>  [2]   indirect
conflicted             1.2.0   RSPM      1.2.0   CRAN  [1]   indirect
cpp11                  0.4.3   RSPM      0.4.3   CRAN  [1]   indirect
crayon                 1.5.2   RSPM      1.5.2   CRAN  [1]   indirect
crosstalk              1.2.0   RSPM      1.2.0   CRAN  [1]   indirect
crul                   1.4.0   RSPM      1.4.0   CRAN  [1]   indirect
curl                   5.0.0   RSPM      5.0.0   CRAN  [1]   indirect
data.table            1.14.8   RSPM     1.14.8   CRAN  [1]   indirect
daymetr                  1.7   RSPM        1.7   CRAN  [1]     direct
dbplyr                 2.3.3   RSPM      2.3.3   CRAN  [1]   indirect
diagram                1.6.5   RSPM      1.6.5   CRAN  [1]   indirect
dials                  1.2.0   RSPM      1.2.0   CRAN  [1]     direct
digest                0.6.31   RSPM     0.6.31   CRAN  [1]   indirect
dplyr                  1.1.2   RSPM      1.1.2   CRAN  [1]     direct
dtplyr                 1.3.1   RSPM      1.3.1   CRAN  [1]   indirect
e1071                 1.7-13   RSPM     1.7-13   CRAN  [1]   indirect
ellipsis               0.3.2   RSPM      0.3.2   CRAN  [1]   indirect
evaluate                0.20   RSPM       0.20   CRAN  [1]   indirect
fansi                  1.0.4   RSPM      1.0.4   CRAN  [1]   indirect
farver                 2.1.1   RSPM      2.1.1   CRAN  [1]   indirect
fastmap                1.1.1   RSPM      1.1.1   CRAN  [1]   indirect
filelock               1.0.2   RSPM      1.0.2   CRAN  [1]   indirect
fontawesome            0.5.1   RSPM      0.5.1   CRAN  [1]   indirect
forcats                1.0.0   RSPM      1.0.0   CRAN  [1]   indirect
foreach                1.5.2   RSPM      1.5.2   CRAN  [1]   indirect
foreign               0.8-85   CRAN       <NA>   <NA>  [2]       <NA>
fs                     1.6.2   RSPM      1.6.2   CRAN  [1]   indirect
furrr                  0.3.1   RSPM      0.3.1   CRAN  [1]   indirect
future                1.33.0   RSPM     1.33.0   CRAN  [1]   indirect
future.apply          1.11.0   RSPM     1.11.0   CRAN  [1]   indirect
gargle                 1.5.2   RSPM      1.5.2   CRAN  [1]   indirect
generics               0.1.3   RSPM      0.1.3   CRAN  [1]   indirect
geodata                0.5-8   RSPM      0.5-8   CRAN  [1]     direct
geojson                0.3.4   RSPM      0.3.4   CRAN  [1]   indirect
geojsonio             0.11.1   RSPM     0.11.1   CRAN  [1]   indirect
geojsonsf              2.0.3   RSPM      2.0.3   CRAN  [1]   indirect
geometries             0.2.2   RSPM      0.2.2   CRAN  [1]   indirect
getPass                0.2-2   RSPM      0.2-2   CRAN  [1]   indirect
ggplot2                3.4.2   RSPM      3.4.2   CRAN  [1]     direct
globals               0.16.2   RSPM     0.16.2   CRAN  [1]   indirect
glue                   1.6.2   RSPM      1.6.2   CRAN  [1]   indirect
googledrive            2.1.1   RSPM      2.1.1   CRAN  [1]   indirect
googlesheets4          1.1.1   RSPM      1.1.1   CRAN  [1]   indirect
gower                  1.0.1   RSPM      1.0.1   CRAN  [1]   indirect
grDevices               <NA>   <NA>       <NA>   <NA>  [2]   indirect
graphics                <NA>   <NA>       <NA>   <NA>  [2]   indirect
grid                    <NA>   <NA>       <NA>   <NA>  [2]   indirect
gridExtra                2.3   RSPM        2.3   CRAN  [1]   indirect
gtable                 0.3.3   RSPM      0.3.3   CRAN  [1]   indirect
hardhat                1.3.0   RSPM      1.3.0   CRAN  [1]   indirect
haven                  2.5.3   RSPM      2.5.3   CRAN  [1]   indirect
here                   1.0.1   RSPM      1.0.1   CRAN  [1]     direct
hexbin                1.28.3   RSPM     1.28.3   CRAN  [1]     direct
highr                   0.10   RSPM       0.10   CRAN  [1]   indirect
hms                    1.1.3   RSPM      1.1.3   CRAN  [1]   indirect
htmltools              0.5.5   RSPM      0.5.5   CRAN  [1]   indirect
htmlwidgets            1.6.2   RSPM      1.6.2   CRAN  [1]   indirect
httpcode               0.3.0   RSPM      0.3.0   CRAN  [1]   indirect
httr                   1.4.5   RSPM      1.4.5   CRAN  [1]     direct
ids                    1.0.1   RSPM      1.0.1   CRAN  [1]   indirect
infer                  1.0.4   RSPM      1.0.4   CRAN  [1]   indirect
ipred                 0.9-14   RSPM     0.9-14   CRAN  [1]   indirect
isoband                0.2.7   RSPM      0.2.7   CRAN  [1]   indirect
iterators             1.0.14   RSPM     1.0.14   CRAN  [1]   indirect
jqr                    1.2.3   RSPM      1.2.3   CRAN  [1]   indirect
jquerylib              0.1.4   RSPM      0.1.4   CRAN  [1]   indirect
jsonify                1.2.2   RSPM      1.2.2   CRAN  [1]   indirect
jsonlite               1.8.4   RSPM      1.8.4   CRAN  [1]   indirect
keyring                1.3.1   RSPM      1.3.1   CRAN  [1]   indirect
knitr                   1.42   RSPM       1.42   CRAN  [1]     direct
labeling               0.4.2   RSPM      0.4.2   CRAN  [1]   indirect
lattice               0.21-8   RSPM     0.21-8   CRAN  [1]   indirect
lava                 1.7.2.1   RSPM    1.7.2.1   CRAN  [1]   indirect
lazyeval               0.2.2   RSPM      0.2.2   CRAN  [1]   indirect
leaflet           2.1.2.9000 GitHub 2.1.2.9000 GitHub  [1]     direct
leaflet.providers      1.9.0   RSPM      1.9.0   CRAN  [1]   indirect
lhs                    1.1.6   RSPM      1.1.6   CRAN  [1]   indirect
lifecycle              1.0.3   RSPM      1.0.3   CRAN  [1]   indirect
listenv                0.9.0   RSPM      0.9.0   CRAN  [1]   indirect
lubridate              1.9.2   RSPM      1.9.2   CRAN  [1]   indirect
magrittr               2.0.3   RSPM      2.0.3   CRAN  [1]   indirect
memoise                2.0.1   RSPM      2.0.1   CRAN  [1]   indirect
methods                 <NA>   <NA>       <NA>   <NA>  [2]   indirect
mgcv                   1.9-0   CRAN      1.9-0   CRAN  [2]   indirect
mime                    0.12   RSPM       0.12   CRAN  [1]   indirect
modeldata              1.2.0   RSPM      1.2.0   CRAN  [1]   indirect
modelenv               0.1.1   RSPM      0.1.1   CRAN  [1]   indirect
modelr                0.1.11   RSPM     0.1.11   CRAN  [1]   indirect
munsell                0.5.0   RSPM      0.5.0   CRAN  [1]   indirect
ncdf4                   1.21   RSPM       1.21   CRAN  [1]   indirect
nlme                 3.1-162   RSPM    3.1-162   CRAN  [1]   indirect
nnet                  7.3-19   CRAN     7.3-19   CRAN  [2]   indirect
numDeriv          2016.8-1.1   RSPM 2016.8-1.1   CRAN  [1]   indirect
openssl                2.0.6   RSPM      2.0.6   CRAN  [1]   indirect
pROC                  1.18.4   RSPM     1.18.4   CRAN  [1]   indirect
parallel                <NA>   <NA>       <NA>   <NA>  [2]   indirect
parallelly            1.36.0   RSPM     1.36.0   CRAN  [1]   indirect
parsnip                1.1.1   RSPM      1.1.1   CRAN  [1]     direct
patchwork              1.1.2   RSPM      1.1.2   CRAN  [1]     direct
pillar                 1.9.0   RSPM      1.9.0   CRAN  [1]   indirect
pkgconfig              2.0.3   RSPM      2.0.3   CRAN  [1]   indirect
plyr                   1.8.8   RSPM      1.8.8   CRAN  [1]   indirect
png                    0.1-8   RSPM      0.1-8   CRAN  [1]   indirect
prettyunits            1.1.1   RSPM      1.1.1   CRAN  [1]   indirect
processx               3.8.2   RSPM      3.8.2   CRAN  [1]   indirect
prodlim           2023.03.31   RSPM 2023.03.31   CRAN  [1]   indirect
progress               1.2.2   RSPM      1.2.2   CRAN  [1]   indirect
progressr             0.13.0   RSPM     0.13.0   CRAN  [1]   indirect
protolite              2.2.0   RSPM      2.2.0   CRAN  [1]   indirect
proxy                 0.4-27   RSPM     0.4-27   CRAN  [1]   indirect
ps                     1.7.5   RSPM      1.7.5   CRAN  [1]   indirect
purrr                  1.0.1   RSPM      1.0.1   CRAN  [1]     direct
ragg                   1.2.5   RSPM      1.2.5   CRAN  [1]   indirect
rapidjsonr             1.2.0   RSPM      1.2.0   CRAN  [1]   indirect
rappdirs               0.3.3   RSPM      0.3.3   CRAN  [1]   indirect
raster                3.6-20   RSPM     3.6-20   CRAN  [1]   indirect
readr                  2.1.4   RSPM      2.1.4   CRAN  [1]     direct
readxl                 1.4.3   RSPM      1.4.3   CRAN  [1]   indirect
recipes                1.0.6   RSPM      1.0.6   CRAN  [1]   indirect
rematch                1.0.1   RSPM      1.0.1   CRAN  [1]   indirect
rematch2               2.1.2   RSPM      2.1.2   CRAN  [1]   indirect
renv                  0.17.3   RSPM     0.17.3   CRAN  [1]     direct
reprex                 2.0.2   RSPM      2.0.2   CRAN  [1]   indirect
reshape2               1.4.4   RSPM      1.4.4   CRAN  [1]   indirect
rlang                  1.1.1   RSPM      1.1.1   CRAN  [1]   indirect
rmarkdown               2.21   RSPM       2.21   CRAN  [1]     direct
rpart                 4.1.19   RSPM     4.1.19   CRAN  [1]   indirect
rprojroot              2.0.3   RSPM      2.0.3   CRAN  [1]   indirect
rsample                1.1.1   RSPM      1.1.1   CRAN  [1]     direct
rstudioapi              0.14   RSPM       0.14   CRAN  [1]   indirect
rvest                  1.0.3   RSPM      1.0.3   CRAN  [1]   indirect
s2                     1.1.3   RSPM      1.1.3   CRAN  [1]   indirect
sass                   0.4.6   RSPM      0.4.6   CRAN  [1]   indirect
scales                 1.2.1   RSPM      1.2.1   CRAN  [1]     direct
selectr                0.4-2   RSPM      0.4-2   CRAN  [1]   indirect
sf                    1.0-12   RSPM     1.0-12   CRAN  [1]     direct
sfheaders              0.4.2   RSPM      0.4.2   CRAN  [1]   indirect
shape                  1.4.6   RSPM      1.4.6   CRAN  [1]   indirect
signal                 0.7-7   RSPM      0.7-7   CRAN  [1]     direct
slider                 0.3.0   RSPM      0.3.0   CRAN  [1]   indirect
sodium                 1.2.1   RSPM      1.2.1   CRAN  [1]   indirect
sp                     1.6-0   RSPM      1.6-0   CRAN  [1]   indirect
spatial               7.3-17   CRAN       <NA>   <NA>  [2]       <NA>
splines                 <NA>   <NA>       <NA>   <NA>  [2]   indirect
stats                   <NA>   <NA>       <NA>   <NA>  [2]   indirect
stats4                  <NA>   <NA>       <NA>   <NA>  [2]   indirect
stringi               1.7.12   RSPM     1.7.12   CRAN  [1]   indirect
stringr                1.5.0   RSPM      1.5.0   CRAN  [1]     direct
survival               3.5-5   RSPM      3.5-5   CRAN  [1]   indirect
sys                    3.4.1   RSPM      3.4.1   CRAN  [1]   indirect
systemfonts            1.0.4   RSPM      1.0.4   CRAN  [1]   indirect
terra                 1.7-29   RSPM     1.7-29   CRAN  [1]     direct
textshaping            0.3.6   RSPM      0.3.6   CRAN  [1]   indirect
tibble                 3.2.1   RSPM      3.2.1   CRAN  [1]   indirect
tidymodels             1.1.0   RSPM      1.1.0   CRAN  [1]     direct
tidyr                  1.3.0   RSPM      1.3.0   CRAN  [1]     direct
tidyselect             1.2.0   RSPM      1.2.0   CRAN  [1]   indirect
tidyterra              0.4.0   RSPM      0.4.0   CRAN  [1]     direct
tidyverse              2.0.0   RSPM      2.0.0   CRAN  [1]     direct
timeDate            4022.108   RSPM   4022.108   CRAN  [1]   indirect
timechange             0.2.0   RSPM      0.2.0   CRAN  [1]   indirect
tinytex                 0.45   RSPM       0.45   CRAN  [1]   indirect
tools                   <NA>   <NA>       <NA>   <NA>  [2]   indirect
triebeard              0.4.1   RSPM      0.4.1   CRAN  [1]   indirect
tune                   1.1.1   RSPM      1.1.1   CRAN  [1]     direct
tzdb                   0.4.0   RSPM      0.4.0   CRAN  [1]   indirect
units                  0.8-2   RSPM      0.8-2   CRAN  [1]   indirect
urltools               1.7.3   RSPM      1.7.3   CRAN  [1]   indirect
utf8                   1.2.3   RSPM      1.2.3   CRAN  [1]   indirect
utils                   <NA>   <NA>       <NA>   <NA>  [2]   indirect
uuid                   1.1-1   RSPM      1.1-1   CRAN  [1]   indirect
vctrs                  0.6.2   RSPM      0.6.2   CRAN  [1]   indirect
viridis                0.6.3   RSPM      0.6.3   CRAN  [1]   indirect
viridisLite            0.4.2   RSPM      0.4.2   CRAN  [1]   indirect
vroom                  1.6.3   RSPM      1.6.3   CRAN  [1]     direct
warp                   0.2.0   RSPM      0.2.0   CRAN  [1]   indirect
withr                  2.5.0   RSPM      2.5.0   CRAN  [1]   indirect
wk                     0.7.2   RSPM      0.7.2   CRAN  [1]   indirect
workflows              1.1.3   RSPM      1.1.3   CRAN  [1]     direct
workflowsets           1.0.1   RSPM      1.0.1   CRAN  [1]   indirect
xfun                    0.39   RSPM       0.39   CRAN  [1]   indirect
xgboost              1.7.5.1   RSPM    1.7.5.1   CRAN  [1]     direct
xml2                   1.3.5   RSPM      1.3.5   CRAN  [1]   indirect
yaml                   2.3.7   RSPM      2.3.7   CRAN  [1]   indirect
yardstick              1.2.0   RSPM      1.2.0   CRAN  [1]   indirect

[1]: /home/runner/work/handfull_of_pixels/handfull_of_pixels/renv/library/R-4.3/x86_64-pc-linux-gnu
[2]: /home/runner/.cache/R/renv/sandbox/R-4.3/x86_64-pc-linux-gnu/95f1b021                         

# ABI ================================
* No ABI conflicts were detected in the set of installed packages.

# User Profile =======================
[1] Source  Package Require Version Dev    
<0 rows> (or 0-length row.names)

# Settings ===========================
List of 11
 $ bioconductor.version     : chr(0) 
 $ external.libraries       : chr(0) 
 $ ignored.packages         : chr(0) 
 $ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo"
 $ r.version                : chr(0) 
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 $ use.cache                : logi TRUE
 $ vcs.ignore.cellar        : logi TRUE
 $ vcs.ignore.library       : logi TRUE
 $ vcs.ignore.local         : logi TRUE
 $ vcs.manage.ignores       : logi TRUE

# Options ============================
List of 9
 $ defaultPackages                     : chr [1:6] "datasets" "utils" "grDevices" "graphics" ...
 $ download.file.method                : NULL
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 $ repos                               : Named chr "https://cloud.r-project.org"
  ..- attr(*, "names")= chr "CRAN"
 $ renv.consent                        : logi TRUE
 $ renv.project.path                   : chr "/home/runner/work/handfull_of_pixels/handfull_of_pixels"
 $ renv.verbose                        : logi TRUE

# Environment Variables ==============
HOME                        = /home/runner
LANG                        = C.UTF-8
MAKE                        = make
R_LIBS                      = <NA>
R_LIBS_SITE                 = /opt/R/4.3.2/lib/R/site-library
R_LIBS_USER                 = /home/runner/work/handfull_of_pixels/handfull_of_pixels/renv/library/R-4.3/x86_64-pc-linux-gnu:/home/runner/.cache/R/renv/sandbox/R-4.3/x86_64-pc-linux-gnu/95f1b021
RENV_CONFIG_REPOS_OVERRIDE  = https://packagemanager.posit.co/cran/__linux__/jammy/latest
RENV_DEFAULT_R_ENVIRON      = <NA>
RENV_DEFAULT_R_ENVIRON_USER = <NA>
RENV_DEFAULT_R_LIBS         = <NA>
RENV_DEFAULT_R_LIBS_SITE    = /opt/R/4.3.2/lib/R/site-library
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RENV_DEFAULT_R_PROFILE      = <NA>
RENV_DEFAULT_R_PROFILE_USER = <NA>
RENV_PROJECT                = /home/runner/work/handfull_of_pixels/handfull_of_pixels

# PATH ===============================
- /home/runner/.local/bin
- /opt/pipx_bin
- /home/runner/.cargo/bin
- /home/runner/.config/composer/vendor/bin
- /usr/local/.ghcup/bin
- /home/runner/.dotnet/tools
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- /usr/local/sbin
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- /usr/sbin
- /usr/bin
- /sbin
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# Cache ==============================
There are a total of 202 packages installed in the renv cache.
Cache path: "~/.cache/R/renv/cache/v5/R-4.3/x86_64-pc-linux-gnu"