The book was rendered on github using the following package configuration:
Diagnostics Report [renv 0.17.3]
================================
# Session Info =======================
R version 4.5.1 (2025-06-13)
Platform: aarch64-apple-darwin20
Running under: macOS Sequoia 15.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Europe/Zurich
tzcode source: internal
attached base packages:
[1] stats graphics grDevices datasets utils methods base
loaded via a namespace (and not attached):
[1] htmlwidgets_1.6.4 compiler_4.5.1 fastmap_1.2.0 cli_3.6.5
[5] htmltools_0.5.8.1 tools_4.5.1 rstudioapi_0.17.1 rmarkdown_2.30
[9] knitr_1.50 jsonlite_2.0.0 xfun_0.54 digest_0.6.37
[13] rlang_1.1.6 renv_0.17.3 evaluate_1.0.5
# Project ============================
Project path: "~/GitHub/geco-bern/handfull_of_pixels"
# Status =============================
The following package(s) are out of sync:
Package Lockfile Version Library Version
hms 1.1.3 1.1.4
lava 1.8.1 1.8.2
listenv 0.9.1 0.10.0
progressr 0.16.0 0.17.0
timeDate 4041.110 4051.111
tune 2.0.0 2.0.1
xfun 0.53 0.54
xml2 1.4.0 1.4.1
Use `renv::snapshot()` to save the state of your library to the lockfile.
Use `renv::restore()` to restore your library from the lockfile.
# Packages ===========================
Library Source Lockfile Source Path Dependency
DBI 1.2.3 CRAN 1.2.3 CRAN [1] indirect
DiceDesign 1.10 CRAN 1.10 CRAN [1] indirect
GPfit 1.0-9 CRAN 1.0-9 CRAN [1] indirect
GenSA 1.1.14.1 CRAN 1.1.14.1 CRAN [1] direct
KernSmooth 2.23-26 CRAN 2.23-26 CRAN [2] indirect
MASS 7.3-65 CRAN 7.3-65 CRAN [2] indirect
MODISTools 1.1.5 CRAN 1.1.5 CRAN [1] direct
Matrix 1.7-3 CRAN 1.7-3 CRAN [2] indirect
ModelMetrics 1.2.2.2 CRAN 1.2.2.2 CRAN [1] indirect
R6 2.6.1 CRAN 2.6.1 CRAN [1] indirect
RColorBrewer 1.1-3 CRAN 1.1-3 CRAN [1] indirect
Rcpp 1.1.0 CRAN 1.1.0 CRAN [1] indirect
S7 0.2.0 CRAN 0.2.0 CRAN [1] indirect
SQUAREM 2021.1 CRAN 2021.1 CRAN [1] indirect
V8 8.0.1 CRAN 8.0.1 CRAN [1] indirect
appeears 1.1 CRAN 1.1 CRAN [1] direct
askpass 1.2.1 CRAN 1.2.1 CRAN [1] indirect
backports 1.5.0 CRAN 1.5.0 CRAN [1] indirect
base64enc 0.1-3 CRAN 0.1-3 CRAN [1] indirect
bit 4.6.0 CRAN 4.6.0 CRAN [1] indirect
bit64 4.6.0-1 CRAN 4.6.0-1 CRAN [1] indirect
blob 1.2.4 CRAN 1.2.4 CRAN [1] indirect
boot 1.3-31 CRAN <NA> <NA> [2] <NA>
broom 1.0.10 CRAN 1.0.10 CRAN [1] indirect
bslib 0.9.0 CRAN 0.9.0 CRAN [1] indirect
bundle 0.1.2 CRAN 0.1.2 CRAN [1] direct
cachem 1.1.0 CRAN 1.1.0 CRAN [1] indirect
callr 3.7.6 CRAN 3.7.6 CRAN [1] indirect
caret 7.0-1 CRAN 7.0-1 CRAN [1] direct
cellranger 1.1.0 CRAN 1.1.0 CRAN [1] indirect
class 7.3-23 CRAN 7.3-23 CRAN [2] indirect
classInt 0.4-11 CRAN 0.4-11 CRAN [1] indirect
cli 3.6.5 CRAN 3.6.5 CRAN [1] indirect
clipr 0.8.0 CRAN 0.8.0 CRAN [1] indirect
clock 0.7.3 CRAN 0.7.3 CRAN [1] indirect
cluster 2.1.8.1 CRAN <NA> <NA> [2] <NA>
codetools 0.2-20 CRAN 0.2-20 CRAN [2] indirect
compiler <NA> <NA> <NA> <NA> [2] indirect
conflicted 1.2.0 CRAN 1.2.0 CRAN [1] indirect
cpp11 0.5.2 CRAN 0.5.2 CRAN [1] indirect
crayon 1.5.3 CRAN 1.5.3 CRAN [1] indirect
crosstalk 1.2.2 CRAN 1.2.2 CRAN [1] indirect
crul 1.6.0 CRAN 1.6.0 CRAN [1] indirect
curl 7.0.0 CRAN 7.0.0 CRAN [1] indirect
data.table 1.17.8 CRAN 1.17.8 CRAN [1] indirect
daymetr 1.7.1 CRAN 1.7.1 CRAN [1] direct
dbplyr 2.5.1 CRAN 2.5.1 CRAN [1] indirect
diagram 1.6.5 CRAN 1.6.5 CRAN [1] indirect
dials 1.4.2 CRAN 1.4.2 CRAN [1] direct
digest 0.6.37 CRAN 0.6.37 CRAN [1] indirect
dplyr 1.1.4 CRAN 1.1.4 CRAN [1] direct
dtplyr 1.3.2 CRAN 1.3.2 CRAN [1] indirect
e1071 1.7-16 CRAN 1.7-16 CRAN [1] indirect
evaluate 1.0.5 CRAN 1.0.5 CRAN [1] indirect
farver 2.1.2 CRAN 2.1.2 CRAN [1] indirect
fastmap 1.2.0 CRAN 1.2.0 CRAN [1] indirect
filelock 1.0.3 CRAN 1.0.3 CRAN [1] indirect
fontawesome 0.5.3 CRAN 0.5.3 CRAN [1] indirect
forcats 1.0.1 CRAN 1.0.1 CRAN [1] indirect
foreach 1.5.2 CRAN 1.5.2 CRAN [1] indirect
foreign 0.8-90 CRAN <NA> <NA> [2] <NA>
fs 1.6.6 CRAN 1.6.6 CRAN [1] indirect
furrr 0.3.1 CRAN 0.3.1 CRAN [1] indirect
future 1.67.0 CRAN 1.67.0 CRAN [1] indirect
future.apply 1.20.0 CRAN 1.20.0 CRAN [1] indirect
gargle 1.6.0 CRAN 1.6.0 CRAN [1] indirect
generics 0.1.4 CRAN 0.1.4 CRAN [1] indirect
geodata 0.6-6 CRAN 0.6-6 CRAN [1] direct
geojson 0.3.5 CRAN 0.3.5 CRAN [1] indirect
geojsonio 0.11.3 CRAN 0.11.3 CRAN [1] indirect
geojsonsf 2.0.3 CRAN 2.0.3 CRAN [1] indirect
geometries 0.2.4 CRAN 0.2.4 CRAN [1] indirect
getPass 0.2-4 CRAN 0.2-4 CRAN [1] indirect
ggplot2 4.0.0 CRAN 4.0.0 CRAN [1] direct
globals 0.18.0 CRAN 0.18.0 CRAN [1] indirect
glue 1.8.0 CRAN 1.8.0 CRAN [1] indirect
googledrive 2.1.2 CRAN 2.1.2 CRAN [1] indirect
googlesheets4 1.1.2 CRAN 1.1.2 CRAN [1] indirect
gower 1.0.2 CRAN 1.0.2 CRAN [1] indirect
grDevices <NA> <NA> <NA> <NA> [2] indirect
graphics <NA> <NA> <NA> <NA> [2] indirect
grid <NA> <NA> <NA> <NA> [2] indirect
gtable 0.3.6 CRAN 0.3.6 CRAN [1] indirect
hardhat 1.4.2 CRAN 1.4.2 CRAN [1] indirect
haven 2.5.5 CRAN 2.5.5 CRAN [1] indirect
here 1.0.2 CRAN 1.0.2 CRAN [1] direct
hexbin 1.28.5 CRAN 1.28.5 CRAN [1] direct
highr 0.11 CRAN 0.11 CRAN [1] indirect
hms 1.1.4 RSPM 1.1.3 CRAN [1] indirect
htmltools 0.5.8.1 CRAN 0.5.8.1 CRAN [1] indirect
htmlwidgets 1.6.4 CRAN 1.6.4 CRAN [1] indirect
httpcode 0.3.0 CRAN 0.3.0 CRAN [1] indirect
httr 1.4.7 CRAN 1.4.7 CRAN [1] direct
ids 1.0.1 CRAN 1.0.1 CRAN [1] indirect
infer 1.0.9 CRAN 1.0.9 CRAN [1] indirect
ipred 0.9-15 CRAN 0.9-15 CRAN [1] indirect
isoband 0.2.7 CRAN 0.2.7 CRAN [1] indirect
iterators 1.0.14 CRAN 1.0.14 CRAN [1] indirect
jqr 1.4.0 CRAN 1.4.0 CRAN [1] indirect
jquerylib 0.1.4 CRAN 0.1.4 CRAN [1] indirect
jsonify 1.2.2 CRAN 1.2.2 CRAN [1] indirect
jsonlite 2.0.0 CRAN 2.0.0 CRAN [1] indirect
keyring 1.4.1 CRAN 1.4.1 CRAN [1] indirect
knitr 1.50 CRAN 1.50 CRAN [1] direct
labeling 0.4.3 CRAN 0.4.3 CRAN [1] indirect
lattice 0.22-7 CRAN 0.22-7 CRAN [2] indirect
lava 1.8.2 CRAN 1.8.1 CRAN [1] indirect
lazyeval 0.2.2 CRAN 0.2.2 CRAN [1] indirect
leaflet 2.2.3 CRAN 2.2.3 CRAN [1] direct
leaflet.providers 2.0.0 CRAN 2.0.0 CRAN [1] indirect
lhs 1.2.0 CRAN 1.2.0 CRAN [1] indirect
lifecycle 1.0.4 CRAN 1.0.4 CRAN [1] indirect
listenv 0.10.0 CRAN 0.9.1 CRAN [1] indirect
lubridate 1.9.4 CRAN 1.9.4 CRAN [1] indirect
magrittr 2.0.4 CRAN 2.0.4 CRAN [1] indirect
memoise 2.0.1 CRAN 2.0.1 CRAN [1] indirect
methods <NA> <NA> <NA> <NA> [2] indirect
mgcv 1.9-3 CRAN <NA> <NA> [2] <NA>
mime 0.13 CRAN 0.13 CRAN [1] indirect
modeldata 1.5.1 CRAN 1.5.1 CRAN [1] indirect
modelenv 0.2.0 CRAN 0.2.0 CRAN [1] indirect
modelr 0.1.11 CRAN 0.1.11 CRAN [1] indirect
ncdf4 1.24 CRAN 1.24 CRAN [1] indirect
nlme 3.1-168 CRAN 3.1-168 CRAN [2] indirect
nnet 7.3-20 CRAN 7.3-20 CRAN [2] indirect
numDeriv 2016.8-1.1 CRAN 2016.8-1.1 CRAN [1] indirect
openssl 2.3.4 CRAN 2.3.4 CRAN [1] indirect
pROC 1.19.0.1 CRAN 1.19.0.1 CRAN [1] indirect
parallel <NA> <NA> <NA> <NA> [2] indirect
parallelly 1.45.1 CRAN 1.45.1 CRAN [1] indirect
parsnip 1.3.3 CRAN 1.3.3 CRAN [1] direct
patchwork 1.3.2 CRAN 1.3.2 CRAN [1] direct
pillar 1.11.1 CRAN 1.11.1 CRAN [1] indirect
pkgconfig 2.0.3 CRAN 2.0.3 CRAN [1] indirect
plyr 1.8.9 CRAN 1.8.9 CRAN [1] indirect
png 0.1-8 CRAN 0.1-8 CRAN [1] indirect
prettyunits 1.2.0 CRAN 1.2.0 CRAN [1] indirect
processx 3.8.6 CRAN 3.8.6 CRAN [1] indirect
prodlim 2025.04.28 CRAN 2025.04.28 CRAN [1] indirect
progress 1.2.3 CRAN 1.2.3 CRAN [1] indirect
progressr 0.17.0 CRAN 0.16.0 CRAN [1] indirect
protolite 2.3.1 CRAN 2.3.1 CRAN [1] indirect
proxy 0.4-27 CRAN 0.4-27 CRAN [1] indirect
ps 1.9.1 CRAN 1.9.1 CRAN [1] indirect
purrr 1.1.0 CRAN 1.1.0 CRAN [1] direct
ragg 1.5.0 CRAN 1.5.0 CRAN [1] indirect
rapidjsonr 1.2.0 CRAN 1.2.0 CRAN [1] indirect
rappdirs 0.3.3 CRAN 0.3.3 CRAN [1] indirect
raster 3.6-32 CRAN 3.6-32 CRAN [1] indirect
readr 2.1.5 CRAN 2.1.5 CRAN [1] direct
readxl 1.4.5 CRAN 1.4.5 CRAN [1] indirect
recipes 1.3.1 CRAN 1.3.1 CRAN [1] indirect
rematch 2.0.0 CRAN 2.0.0 CRAN [1] indirect
rematch2 2.1.2 CRAN 2.1.2 CRAN [1] indirect
renv 0.17.3 CRAN 0.17.3 CRAN [1] direct
reprex 2.1.1 CRAN 2.1.1 CRAN [1] indirect
reshape2 1.4.4 CRAN 1.4.4 CRAN [1] indirect
rlang 1.1.6 CRAN 1.1.6 CRAN [1] indirect
rmarkdown 2.30 CRAN 2.30 CRAN [1] direct
rpart 4.1.24 CRAN 4.1.24 CRAN [2] indirect
rprojroot 2.1.1 CRAN 2.1.1 CRAN [1] indirect
rsample 1.3.1 CRAN 1.3.1 CRAN [1] direct
rstudioapi 0.17.1 CRAN 0.17.1 CRAN [1] indirect
rvest 1.0.5 CRAN 1.0.5 CRAN [1] indirect
s2 1.1.9 CRAN 1.1.9 CRAN [1] indirect
sass 0.4.10 CRAN 0.4.10 CRAN [1] indirect
scales 1.4.0 CRAN 1.4.0 CRAN [1] direct
selectr 0.4-2 CRAN 0.4-2 CRAN [1] indirect
sf 1.0-21 CRAN 1.0-21 CRAN [1] direct
sfd 0.1.0 CRAN 0.1.0 CRAN [1] indirect
sfheaders 0.4.4 CRAN 0.4.4 CRAN [1] indirect
shape 1.4.6.1 CRAN 1.4.6.1 CRAN [1] indirect
signal 1.8-1 CRAN 1.8-1 CRAN [1] direct
slider 0.3.2 CRAN 0.3.2 CRAN [1] indirect
sp 2.2-0 CRAN 2.2-0 CRAN [1] indirect
sparsevctrs 0.3.4 CRAN 0.3.4 CRAN [1] indirect
spatial 7.3-18 CRAN <NA> <NA> [2] <NA>
splines <NA> <NA> <NA> <NA> [2] indirect
stats <NA> <NA> <NA> <NA> [2] indirect
stats4 <NA> <NA> <NA> <NA> [2] indirect
stringi 1.8.7 CRAN 1.8.7 CRAN [1] indirect
stringr 1.5.2 CRAN 1.5.2 CRAN [1] direct
survival 3.8-3 CRAN 3.8-3 CRAN [2] indirect
sys 3.4.3 CRAN 3.4.3 CRAN [1] indirect
systemfonts 1.3.1 CRAN 1.3.1 CRAN [1] indirect
tailor 0.1.0 CRAN 0.1.0 CRAN [1] indirect
terra 1.8-70 CRAN 1.8-70 CRAN [1] direct
textshaping 1.0.4 CRAN 1.0.4 CRAN [1] indirect
tibble 3.3.0 CRAN 3.3.0 CRAN [1] indirect
tidymodels 1.4.1 CRAN 1.4.1 CRAN [1] direct
tidyr 1.3.1 CRAN 1.3.1 CRAN [1] direct
tidyselect 1.2.1 CRAN 1.2.1 CRAN [1] indirect
tidyterra 0.7.2 CRAN 0.7.2 CRAN [1] direct
tidyverse 2.0.0 CRAN 2.0.0 CRAN [1] direct
timeDate 4051.111 CRAN 4041.110 CRAN [1] indirect
timechange 0.3.0 CRAN 0.3.0 CRAN [1] indirect
tinytex 0.57 CRAN 0.57 CRAN [1] indirect
tools <NA> <NA> <NA> <NA> [2] indirect
triebeard 0.4.1 CRAN 0.4.1 CRAN [1] indirect
tune 2.0.1 CRAN 2.0.0 CRAN [1] direct
tzdb 0.5.0 CRAN 0.5.0 CRAN [1] indirect
units 1.0-0 CRAN 1.0-0 CRAN [1] indirect
urltools 1.7.3.1 CRAN 1.7.3.1 CRAN [1] indirect
utf8 1.2.6 CRAN 1.2.6 CRAN [1] indirect
utils <NA> <NA> <NA> <NA> [2] indirect
uuid 1.2-1 CRAN 1.2-1 CRAN [1] indirect
vctrs 0.6.5 CRAN 0.6.5 CRAN [1] indirect
viridisLite 0.4.2 CRAN 0.4.2 CRAN [1] indirect
vroom 1.6.6 CRAN 1.6.6 CRAN [1] direct
warp 0.2.1 CRAN 0.2.1 CRAN [1] indirect
withr 3.0.2 CRAN 3.0.2 CRAN [1] indirect
wk 0.9.4 CRAN 0.9.4 CRAN [1] indirect
workflows 1.3.0 CRAN 1.3.0 CRAN [1] direct
workflowsets 1.1.1 CRAN 1.1.1 CRAN [1] indirect
xfun 0.54 RSPM 0.53 CRAN [1] indirect
xgboost 1.7.11.1 CRAN 1.7.11.1 CRAN [1] direct
xml2 1.4.1 CRAN 1.4.0 CRAN [1] indirect
yaml 2.3.10 CRAN 2.3.10 CRAN [1] indirect
yardstick 1.3.2 CRAN 1.3.2 CRAN [1] indirect
[1]: /Users/faber/GitHub/geco-bern/handfull_of_pixels/renv/library/R-4.5/aarch64-apple-darwin20
[2]: /Users/faber/Library/Caches/org.R-project.R/R/renv/sandbox/R-4.5/aarch64-apple-darwin20/4cd76b74
# ABI ================================
* No ABI conflicts were detected in the set of installed packages.
# User Profile =======================
[no user profile detected]
# Settings ===========================
List of 11
$ bioconductor.version : chr(0)
$ external.libraries : chr(0)
$ ignored.packages : chr(0)
$ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo"
$ r.version : chr(0)
$ snapshot.type : chr "implicit"
$ use.cache : logi TRUE
$ vcs.ignore.cellar : logi TRUE
$ vcs.ignore.library : logi TRUE
$ vcs.ignore.local : logi TRUE
$ vcs.manage.ignores : logi TRUE
# Options ============================
List of 9
$ defaultPackages : chr [1:6] "datasets" "utils" "grDevices" "graphics" ...
$ download.file.method : NULL
$ download.file.extra : NULL
$ install.packages.compile.from.source: chr "interactive"
$ pkgType : chr "both"
$ repos : Named chr "https://cloud.r-project.org"
..- attr(*, "names")= chr "CRAN"
$ renv.consent : logi TRUE
$ renv.project.path : chr "/Users/faber/GitHub/geco-bern/handfull_of_pixels"
$ renv.verbose : logi TRUE
# Environment Variables ==============
HOME = /Users/faber
LANG = en_US.UTF-8
MAKE = make
R_LIBS = <NA>
R_LIBS_SITE = /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/site-library
R_LIBS_USER = /Users/faber/GitHub/geco-bern/handfull_of_pixels/renv/library/R-4.5/aarch64-apple-darwin20:/Users/faber/Library/Caches/org.R-project.R/R/renv/sandbox/R-4.5/aarch64-apple-darwin20/4cd76b74
RENV_DEFAULT_R_ENVIRON = <NA>
RENV_DEFAULT_R_ENVIRON_USER = <NA>
RENV_DEFAULT_R_LIBS = <NA>
RENV_DEFAULT_R_LIBS_SITE = /Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/site-library
RENV_DEFAULT_R_LIBS_USER = /Users/faber/Library/R/arm64/4.5/library
RENV_DEFAULT_R_PROFILE = <NA>
RENV_DEFAULT_R_PROFILE_USER = <NA>
RENV_PROJECT = /Users/faber/GitHub/geco-bern/handfull_of_pixels
# PATH ===============================
- /usr/local/bin
- /usr/local/bin
- /usr/local/opt/openssl/bin
- /usr/local/bin
- /System/Cryptexes/App/usr/bin
- /usr/bin
- /bin
- /usr/sbin
- /sbin
- /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin
- /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin
- /var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin
- /opt/homebrew/bin
- /usr/local/opt/openssl/bin
- /usr/local/anaconda3/condabin
- /Users/faber/.juliaup/bin
- /opt/homebrew/sbin
- /Applications/quarto/bin
- /Library/TeX/texbin
- /usr/texbin
- /Applications/RStudio.app/Contents/Resources/app/quarto/bin
- /Applications/RStudio.app/Contents/Resources/app/bin/postback
# Cache ==============================
There are a total of 214 packages installed in the renv cache.
Cache path: "~/Library/Caches/org.R-project.R/R/renv/cache/v5/R-4.5/aarch64-apple-darwin20"