New features
- Added support for LULUC (land use, land-use change) in BiomeE. See vignette
biome_luluc for details.
- New BiomeE behavior to recycle last year of forcing if requested simulation time span (
nyeartrend) is longer than available forcing data.
Breaking changes
- Breaking changes in biomee drivers:
-
init_cohort$init_n_cohorts column has been phased out and must not be present in
drivers to protect against data corruption.
-
update_annualLAImax flag was removed and the behavior is now slightly altered since LAImax and underLAImax are set and kept constant at the start of the simulation:
-
LAImax takes value max(LAI_light, 0.5)
-
underLAImax takes value min(LAImax, 1.2)
-
do_closedN_run flag now uses initial inorganic N setting rather than arbitrary value and is false by default.
- Modified drivers to use more sensibles values
- Species 1 is now a C4 crop
-
N_input is set to 0.01 to limit N starvation.
- Breaking changes in biomee output
- renamed the following column names in
output_daily_tile:
-
totWs=>SoilWater
-
Trsp=>Transp
-
SW_C=>sapwoodC and SW_N=>sapwoodN
-
HW_C=>heartwoodC and HW_N=>heartwoodN
-
McrbC=>mcrbC and McrbN=>mcrbN
- added
NPP
- renamed the following column names in
output_annual_tile and output_annual_cell:
-
rain=>Prcp
-
SeedC=>seedC (and for N)
-
SapwoodC=>sapwoodC (and for N)
-
WoodC=>heartwoodC (and for N)
-
SlowSOM=>slowSOM
-
McrbC=>mcrbC and McrbN=>mcrbN
- added
totC
- renamed the following column names in
output_annual_cohorts:
-
nsc=>NSC and nsn=>NSN
-
sapwC=>sapwoodC
-
woodC=>heartwoodC
-
Nupt=>N_uptk
-
Nfix=>N_fxed
- switched column positions of
NPP and GPP
- This model version behaves exactly as the version before.
- Update was necessary to include description of scripts and data used for the model documentation paper into archive on Zenodo
- new BiomeE forcing data matching that of P-model
-
prec is now called rain
-
rh is now provided as vpd
- See
biomee_gs_leuning_drivers for an example
- fix Fortran modules leading to segmentation faults using BiomeE model
- improved documentation
- bugfix Fortran modules and derived types
- compilation flags for different platforms
- bugfix on input data type P-model
- LM3-PPA to BiomeE renaming
- cost function rewrite
- update output format (consistency)
- add water balance variables to P-model output
- new p-model calibratable parameters
- rewrite of temperature and soil moisture stress functions
- update simulation parameters to take netrad, ppfd and ccov as input forcing
- documentation parameter sensitivity analysis
- documentation on the data format
- document calibration diagnostic and model uncertainty calculation
- more transparent licensing and copyright statements in COPYING file
- Consistent variable names p-model / biomee
- optimization stability BayesianTools
- documentation
- Bugfixes
- Canopy transfer solved for BiomeE with P-model
- Bugfixes
- Catching aborting in FORTRAN part to avoid R session crashes
- Public release after refactored code
